BDM serves as an evaluative metric for assessing the quality of predicted protein complex structures. Its scoring range lies between 0 and 1, with higher scores signifying greater accuracy in predicting structural conformations.
Download the Code
The compressed folder includes three Python files and a shell script. These three Python files represent the intermediate steps for computing BDM and can be individually utilized to compute each specific stage. The shell script is designed to compute the actual BDM metric values. Batch processing of protein structures for scoring can also be achieved by modifying the shell file.
Run:
Please ensure that the number of residues in the input true structure matches that of the predicted structure before running. Next, upload the true and predicted structures separately, click the "Submit" button, then click "Run" to initiate the computation. Finally, click the provided link to download the generated results.
Reference:
BDM: An Assessment Metric for Protein Complex Structure Models Based on Distance Difference Matrix
Contact us:
If you have any questions during operation, you can contact us through zhaijq93@ruc.edu.cn.
Download_example
The examples contain two pdb files, where file T1070o_T1070TS193_3o gt.pdb" is the ground truth; file T1070o_T1070TS193_3o.pdb is the predicted model.The residue numbers of these two protein structures are consistent.
